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Author	SHA1	Message	Date
Mmuq	d3a7e9ef0f	Resolve merge conflict: keep Pass 2 spillover fix over remote's buggy version ... Remote annotationsfix had a partial port of threshold_qualifier without the Pass 2 hysteresis spillover fix. Kept our corrected version in both conflicting sections: - Pass 2 mask expanded by window_size guard band around Pass 1 ranges - Pass 2 expansion runs against residual_power instead of smoothed_power	2026-04-20 12:22:46 -04:00
Mmuq	93ae08bc91	Port threshold_qualifier improvements and Pass 2 spillover fix from utils ... The OSS threshold_qualifier was last synced from utils on Feb 23 2026, before the major robustness improvements landed in utils on Mar 19 2026. This commit brings it fully up to date. Changes ported from utils: - Multi-pass detection (Pass 1 strong burst, Pass 2 weak residual, Pass 3 sustained faint burst via macro-window averaging) - Noise floor estimation via percentile instead of simple max*threshold - Dynamic range ratio guard (early exit on low-contrast captures) - Improved _find_ranges, _expand_and_filter_ranges, _merge_ranges helpers - Spectral smoothing in _estimate_spectral_bounds for wideband bursts - Minimum duration filter expressed in absolute time (5ms) not sample count Also includes the Pass 2 hysteresis spillover fix: - Pass 2 expansion now runs against residual_power (masked) instead of smoothed_power, preventing it from walking into Pass 1 territory - Pass 2 mask now has a window_size guard band around Pass 1 ranges, matching the guard already used in Pass 3 Only change from utils: import swapped to ria_toolkit_oss.datatypes.	2026-04-20 12:11:05 -04:00
Mmadrigal	1005228d69	Linting and updated poetry.lock	2026-04-02 11:07:12 -04:00
Mmadrigal	3eb084bc08	Merge branch 'main' of https://riahub.ai/qoherent/ria-toolkit-oss into annotationsfix	2026-04-02 11:00:42 -04:00
Mmadrigal	c7b88f1f14	Fixed import typo	2026-04-02 10:52:31 -04:00
Mmadrigal	e1025794a8	Fixed overwrite issue	2026-04-02 10:52:17 -04:00
Mmadrigal	cfa1da9f4d	Linting	2026-04-02 10:37:42 -04:00
Mmadrigal	0e3e022084	Updated poetry.lock	2026-04-02 10:35:21 -04:00
benchinnery	2182899162	Merge pull request 'reporting campaign status' (#20) from zfp-oss into main ... Reviewed-on: #20	2026-04-01 15:25:02 -04:00
ben	da9a0b07bd	poetry update	2026-04-01 15:05:30 -04:00
ben	3e9ac43800	reporting campaign status	2026-04-01 14:08:13 -04:00
benchinnery	44df45160e	Merge pull request 'zfp-oss tools' (#18) from zfp-oss into main ... Reviewed-on: #18 Reviewed-by: gillian <gillian@qoherent.ai>	2026-04-01 13:52:06 -04:00
ben	f67c995846	reformats	2026-04-01 12:28:41 -04:00
ben	c36fdcf607	optimiztions and fixes	2026-04-01 11:57:59 -04:00
F fordg1	5d909c4a22	Update to be accurate to ria toolkit	2026-03-31 15:27:45 -04:00
F fordg1	5cfced8855	Fix merge conflicts and port all imports from utils to ria_toolkit_oss ... Resolves unresolved merge conflict markers left in committed files across the annotations, view, data, and CLI packages. Updates all remaining imports from the old utils.* namespace to ria_toolkit_oss.datatypes, ria_toolkit_oss.io, and ria_toolkit_oss.view equivalents.	2026-03-31 15:16:32 -04:00
F fordg1	ee2ce3b1f4	Merge branch 'annotationsfix' of https://riahub.ai/qoherent/ria-toolkit-oss into annotationsfix	2026-03-31 14:56:36 -04:00
F fordg1	5b1c51797b	logos	2026-03-31 14:54:27 -04:00
ben	9a960e2f29	zfp functionality and servers	2026-03-31 13:51:10 -04:00
F fordg1	2bb2d9d5a7	Removing logos	2026-03-31 13:48:38 -04:00
F fordg1	11d9532b5c	Port annotation system from utils and fix ria package imports ... Annotations package (new): - Add threshold_qualifier with 3-pass hysteresis detector (Pass 1: strong bursts, Pass 2: weak residual bursts, Pass 3: macro-window faint burst detection), auto window_size scaled to 1ms, channel selection, and stable noise_floor baseline throughout - Add energy_detector, cusum_annotator, parallel_signal_separator, qualify_slice, signal_isolation, annotation_transforms - Add __init__.py exporting the four functions used by the CLI - Fix all imports from utils.data → ria_toolkit_oss.datatypes CLI annotate command (new): - Port full annotate CLI from utils including list, add, remove, clear, energy, cusum, threshold, and separate subcommands - Fix imports from utils.* → ria_toolkit_oss.* and utils_cli.* → ria_toolkit_oss_cli.* - Safe overwrite logic: _annotated files always writable, originals protected; --overwrite writes in-place only on _annotated inputs CLI view command: - Add 'annotations' as a valid --type, wiring view_annotations from view_signal view_signal.py: - Add view_annotations function with blue/purple alternating palette and threshold %-sorted drawing order (lower % renders on top) recording.py (datatypes): - Fix lazy imports in to_wav() and to_blue() from utils.io → ria_toolkit_oss.io io/recording.py: - Add compatibility shim in from_npy to remap utils.data.annotation.Annotation to ria_toolkit_oss.datatypes.annotation.Annotation when loading .npy files pickled by the utils package	2026-03-31 13:34:00 -04:00
ben	7335dc4c52	server change	2026-03-12 11:45:07 -04:00
ben	019b0c6f4b	reformats and campaign additions	2026-03-11 10:27:18 -04:00
Mmuq	e41f061caa	Merge branch 'annotationsfix' of https://riahub.ai/qoherent/ria-toolkit-oss into annotationsfix	2026-02-23 14:14:16 -05:00
Mmuq	16ac8dbfb6	updated annotations from utils to oss	2026-02-23 14:12:34 -05:00
Ggillian	af3ae03baf	Moving annotate into CLI	2026-02-23 14:09:42 -05:00
Ggillian	5c0c20619f	Moving over from utils	2026-02-23 14:00:59 -05:00
Ggillian	4ee8ee5fe0	Moving from utils	2026-02-23 14:00:06 -05:00
Ggillian	f7eedfa2bd	Annotate added to cli	2026-02-23 13:48:46 -05:00
Ggillian	fc6a1824a5	Added change log for future code from utils	2026-02-20 16:38:27 -05:00
Ggillian	b1e3ebf74f	Merge pull request 'viewfix' (#17) from viewfix into main ... Reviewed-on: #17 Reviewed-by: madrigal <madrigal@qoherent.ai>	2026-02-02 11:02:59 -05:00
Mmadrigal	1cb9cb6463	Linting	2026-01-30 17:51:01 -05:00
Mmadrigal	823a0aba85	Linting	2026-01-30 17:43:10 -05:00
Ggillian	1719057529	Moved titles to the left	2026-01-29 16:21:58 -05:00
Ggillian	19f63bf3d0	Titles moved to center	2026-01-29 16:16:38 -05:00
Ggillian	0b4824d1cb	Adding Qoherent images	2026-01-29 16:11:38 -05:00
Ggillian	44032cd799	Removed EngFormatter	2026-01-29 16:05:41 -05:00
Ggillian	f5209233d7	- Changed font size to be smaller ... - Changed graph size to be larger	2026-01-29 16:00:40 -05:00
Ggillian	262032f424	Moved view titles to the left	2026-01-29 14:03:18 -05:00
Ggillian	6cc120062d	Adjusted view formatting to give the title more room	2026-01-29 13:28:25 -05:00
Ggillian	00aec7278a	Merge branch 'main' of https://riahub.ai/qoherent/ria-toolkit-oss into viewfix	2026-01-29 13:23:54 -05:00
benchinnery	71f23e3a96	Merge pull request 'recording performance improvements' (#16) from sred-recording-fix into main ... Reviewed-on: #16	2026-01-27 12:56:38 -05:00
ben	0178adcdb5	lint fix	2026-01-27 12:49:09 -05:00
ben	0ee6f5e63f	recording performance improvements	2026-01-27 12:44:27 -05:00
Mmadrigal	70f132c54c	Merge pull request 'cli' (#15) from cli into main ... Reviewed-on: #15 Reviewed-by: gillian <gillian@qoherent.ai>	2025-12-22 10:42:57 -05:00
Mmadrigal	9d010b8cd7	Updated poetry.lock file	2025-12-19 11:27:24 -05:00
Mmadrigal	262d6ce9ee	Formatting	2025-12-19 11:25:06 -05:00
Mmadrigal	787ad8449b	Added generated files to gitignore	2025-12-19 11:19:03 -05:00
Ggillian	e967a33024	Removed recordings	2025-12-17 15:21:47 -05:00
Ggillian	97dc1ff272	Added number of samples to capture example	2025-12-17 15:21:04 -05:00